Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015889491.1_cds_XP_016444216.1_39301
CDS Infomation

[gene=LOC107769508] [db_xref=GeneID:107769508] [protein=ubiquitin carboxyl-terminal hydrolase 12-like] [partial=5'] [exception=annotated by transcript or proteomic data] [protein_id=XP_016444216.1] [location=complement(join(118261..118302,120322..120408,120542..120616,120747..120863,121131..121217,121626..121691,121854..121919,128156..128227,128305..128406,128579..128756,128844..128899,129138..129161,129203..129317,129406..129494,129610..129687,134450..134572,136140..136259,136342..136422,136514..136660,136740..136818,138039..138113,140195..140304,141385..141483,142146..142261,142347..142455,142527..142745,142839..143104,152436..152593,152721..152868,153656..>153743))] [gbkey=CDS]
Sequence

CATCAAGAAGAGGAGGAGATGCTGGTGCCACGTGCAGACATGGTTGAAGGTCCTCAACCC
TTAGTTGAAGGTCCTCAGCCCATGGAAGTGACGCCGACTGAGAATGCTAGTGCAGTGGAG
AATCAAGCCGTGGATGAGCCGCAGGCTTCGCGGTTTACTTGGACAATTGATAATTTCTCT
CGGCTATCAGTGAAGAAGTTATATTCTGAGGTTTTCAGTGTTGGTAGTTATAAATGGAGA
GTGCTAATATTTCCAAAAGGAAATAATGTGGATTGTTTGTCGATGTACTTAGATGTAGCA
GATTCAGCTGCACTTCCATATGGGTGGAGTAGGTATGCCCAGTTCAGCTTAGCTGTTGTG
AATCAAGTAAATCCCAAGTATACTGTGAAAAAAGAGACACAACACCAGTTTAACCAAAGA
GAGAGTGACTGGGGCTTCACATCTTTCATGCTTCTAAGTGAGCTTTATGATACCAACAAG
GGATATCTCGTAAATGATAGAGTTGTTATTGAAGCTGATGTTGCTGTACGTAAGGTCATT
GATTACTGGACATATGACTCGAAGAAGGAGACTGGATATGTTGGGCTTAAAAATCAGGGA
GCTACTTGTTACATGAACTCTCTCCTACAAACCCAATACCATATTCCCTACTTTAGAAAG
GCTGTGTACCATATGCCGACTACAGAGAATGATATGCCTTCAGGGAGCATTCCATTAGCT
CTGCAGAGTTTATTCTATAAGCTCCAGTACAGTGATACGAGTGTGGCGACAAAAGAATTA
ACAAAATCCTTTGGCTGGGACACTTATGATTCATTTATGCAGCATGATGTGCAAGAACTA
AATAGAGTTTTGTGTGAAAAGCTTGAAGACAAGATGAAGGGCACGGTTGTGGAAGGGACA
ATTCAGAAGTTATTTGAGGGCCACCACATGAATTACATCGAATGTATTAATGTGGACTTT
AAATCGACGAGAAAAGAGTCATTTTATGATCTTCAACTTGATGTCAAAGGCTGTCACGAT
GTTTATGCCTCTTTTGACAAGTATGTAGAAGTTGAACGTCTAGAAGGCGATAACAAGTAC
CATGCTGAAGAACATGGTTTGCAGGATGCTAAGAAGGGTGTACTGTTTATTGACTTTCCT
CCAGTTCTCCAGCTTCAGTTAAAGCGGTTTGAATATGATTTCATGCGAGATACAATGGTT
AAGATAAATGACCGCTACGAATTTCCTCTGGAACTTGACCTTGATAGGGAGAATGGCAAA
TATTTATCTCCCGATGCAGACAGGAGTGTTCGAAACCTCTATACACTTCATAGTGTTTTG
GTTCATAGTGGTGGGGTGCATGGTGGACATTATTATGCTTTCATCAGGCCGACGTTATCA
GATCAATGGTACAAGTTTGATGATGAACGGGTGACAAAAGAAGACATGAAGAGGGCTTTA
GAGGAACAGTATGGTGGTGAGGAGGAGTTGCCACAGACAAATCCAGGTTTCAATAACGCT
CCCTTTAAGTTTACAAAATACTCAAATGCTTACATGCTGGTTTACATACGTGAGAGCGAC
AAGGATAAAATAATATGTGATGTGGATGAGAAGGACATTGCAGAACATCTGAGAATAAGG
TTAAAGAAAGAACAAGAAGAGAAAGAGGACAAGAGAAGATACAAAGCGCAGGCCCATCTT
TATACAATTATCAAGGTTGCACGCGATGAGGATCTTAAGGAACAGATTGGAAGGGAGATA
TATTTTGATCTTGTGGATCATGACAAAGTTCATAGCTTTCGGATTCAGAAACAGATGCCT
TTTAACCTTTTCAAGGAGGAAGTTGCAAAGGAATTGGGTATACCTGTTCCATTTCAGCGT
TTCTGGATTTGGGCAAAGCGGCAAAATCACACTTATCGGCCTAATCGTCCGTTGAGTCCA
CAGGAGGAACTACAAACAGTTGGGCAGTTAAGAGAAGTTTCTAACAAAACCAACACTGCG
GAACTGAAGTTATTTTTGGAAGTGAACCATGGGCTGGATCTGCTTCCTATTCCTCTACTT
GAAAAAAGTAAAGATGATATACTCCTTTTCTTCAAACTTTATGATCCTGAGAAAGAAGAA
CTACGTTATATTGGTAGGCTGTTTGTGAAGAGTTCCAGTAAGGCAACTGATATACTTGGA
AAGCTGAATGAATTGGCTGGATTTTCTCCCGACCAAGAAATTGAGCTTTTTGAGGTGTGT
TTGGAATATGTGAAAAATCGCCAGATTGTCCATTTTAGAGCTCTGGAGAAACCAAAGGAA
GTTGATTTCTGTCTGGAGTTAGCAAAAAGCAACACATATGATGTAGTAGTGGACAAAGTA
GCTCAGCGTCTTGGAGTGGATGATCCTTCAAAAATTAGGCTGACTCCTCATAACTGCTAC
TCACAGCAACCAAAGCCCAACCCCATTAAGTATCGGTCTGTCGATCATCTGGTTGACATG
CTTATCCACTACAATCAGATCTCTGATATTCTGTATTATGAAGTTCTGGACATCCCTCTG
CCAGAGCTGCAATGTCTGAAGACACTCAAGGTCGCCTTTCATCATTCCACAAAGGATGAG
ATTGAAATTCTGAACATAAGATTGCCTAAGCAGAGTACTGTGGGTGATGTGCTTAATGAA
ATCAAATCAAAGGTTGACTTGTCTCGTCAAGATGCAGAACTTAGATTACTTGAAGTCTTC
TATCACAAGATCTATAAGATCTTTCCACTCACTGAAAAAATTGAGAATATAAATGACCAG
TACTGGACACTGCGGGCAGAGGAGATACCAGAAGAAGAGAAAAATCTTGGTCCCCATGAT
CGTTTAATTCATGTTTACCATTTCACGAAAGAGACTCCACAGAATCAAATGCAAGTGCAG
AATTTCGGGGAACCTTTCTTTCTGGTTATCCATGAAGGTGAAACGTTAGCTGAGATTAAA
GTGCGCATTCAAAAGAAATTGCAGGTTCCAGATGAGGAGTTCTCTAAGTGGAAGTTTGCA
TTTTTGTCATTGGGGCGCCCAGATTACCTTCAGGACTCTGACATTGTATCCAGTCGTTTC
CAGAGAAGAGATGTTTATGGTGCTTGGGAACAGTATCTTGGGTTGGAGCATGCAGATAAT
ACACCTAAGAGAGCTTACTCAGTTAGCCAGAACCGACACACCTTTGAAAAGCCTGTCAAG
ATATACAACTGA

Peptide Sequence

PEP ID

XP_016444216.1
PEP Infomation

PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Nicotiana tabacum]
Sequence

MTMLNSQPLDHQEEEEMLVPRADMVEGPQPLVEGPQPMEVTPTENASAVENQAVDEPQAS
RFTWTIDNFSRLSVKKLYSEVFSVGSYKWRVLIFPKGNNVDCLSMYLDVADSAALPYGWS
RYAQFSLAVVNQVNPKYTVKKETQHQFNQRESDWGFTSFMLLSELYDTNKGYLVNDRVVI
EADVAVRKVIDYWTYDSKKETGYVGLKNQGATCYMNSLLQTQYHIPYFRKAVYHMPTTEN
DMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLED
KMKGTVVEGTIQKLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCHDVYASFDKYVE
VERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPL
ELDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDER
VTKEDMKRALEEQYGGEEELPQTNPGFNNAPFKFTKYSNAYMLVYIRESDKDKIICDVDE
KDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLKEQIGREIYFDLVDHDKV
HSFRIQKQMPFNLFKEEVAKELGIPVPFQRFWIWAKRQNHTYRPNRPLSPQEELQTVGQL
REVSNKTNTAELKLFLEVNHGLDLLPIPLLEKSKDDILLFFKLYDPEKEELRYIGRLFVK
SSSKATDILGKLNELAGFSPDQEIELFEVCLEYVKNRQIVHFRALEKPKEVDFCLELAKS
NTYDVVVDKVAQRLGVDDPSKIRLTPHNCYSQQPKPNPIKYRSVDHLVDMLIHYNQISDI
LYYEVLDIPLPELQCLKTLKVAFHHSTKDEIEILNIRLPKQSTVGDVLNEIKSKVDLSRQ
DAELRLLEVFYHKIYKIFPLTEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTK
ETPQNQMQVQNFGEPFFLVIHEGETLAEIKVRIQKKLQVPDEEFSKWKFAFLSLGRPDYL
QDSDIVSSRFQRRDVYGAWEQYLGLEHADNTPKRAYSVSQNRHTFEKPVKIYN

Transcript Sequence

Gene sequence data has not been registered.